Data¶
Three CSV files, all linked by subject_id, all generated together by
data/generate_datasets.ipynb:
| File | Type | Columns | Used by |
|---|---|---|---|
dataset_NPSY.csv |
Synthetic | age, sex, criq, apacs, att_matr, moca |
Case Study 1 & 2 |
dataset_ERP.csv |
Synthetic | n400_amp, n400_lat, p300_amp, p300_lat |
Case Study 1 |
dataset_PSD.csv |
Real | mean_power, delta_power, theta_power, alpha_power, beta_power, gamma_power |
Case Study 2 (summary only — the real analysis uses the full arrays below) |
Each file has 45 rows (46 with the header): 40 clean participants used
in the final analyses, plus 5 deliberately added with missing or
implausible values, so each case study has something real to detect and
exclude (see its Data Wrangling section). The audit trail
(data/EEG/PSD/subject_id_mapping.csv) flags these five with a -dup
suffix, since they are duplicated spectra rather than independent
recordings.
What's synthetic and what's real¶
-
Synthetic
dataset_NPSY.csvanddataset_ERP.csvare entirely invented — so that the associations each case study demonstrates are known in advance, and so the tutorial can be run end to end without real patient data. -
Real
Case Study 2's EEG spectra are real, anonymised recordings from the PATHS study (
data/EEG/PSD/psd_matrix.npy,psd_log_matrix.npy, computed bydata/EEG/PSD/compute_psd.ipynbfrom real epoched recordings), authorised for publication here. Case Study 2 itself reads the_fullvariants of these two arrays (psd_log_matrix_full.npy,psd_matrix_full.npy), which also include the 5 duplicated spectra mentioned above — the original 40-recording files are never modified.
Important disclosure
Because the real EEG and the synthetic neuropsychological table do
not come from the same patients, the (synthetic) moca column was
deliberately linked to a real, montage-based property of each
recording. The resulting brain–behaviour association in Case
Study 2 should not be read as a real clinical finding — see the
notice at the top of generate_datasets.ipynb for the full
disclosure.